..  analyze-md documentation master file, created by
    sphinx-quickstart on Fri Sep 19 09:37:32 2025.
    You can adapt this file completely to your liking, but it should at least
    contain the root `toctree` directive.

.. toctree::
    :maxdepth: 2
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    :caption: Contents
   
    viscosity
    self-diffusion
    cross-correlation
    contribution

analyze-md documentation
========================

**Date:** |today| - **Author:** Omid Shayestehpour - **Version:** |release|

``analyze-md`` is a collection of Python scripts for computing physical properties and analyzing trajectories from molecular dynamics (MD) simulations.

Please see the `GitHub repository <https://github.com/omidshy/analyze-md>`__ for the source code and to report issues.